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Evolutionary biologist, statistician, nice guy. These pages contain an overview of my research, software I have written and descriptions of short research projects in a blog. I study how interactions between mutations affects evolutionary trajectories and outcomes. I use laboratory automation and response surface methodologies to create protocols and methods that allow for experiments to be accurately and easily performed on a large scale.
Being able to launch Jalview in a single step from a web browser. Being able to retrieve data from public databases eg Uniprot. Linked views of aligned sequences, structures and trees. Jalview demonstration at Seaview Primary School.
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SELECTOME.UNIL.CH SERVER
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We discovered that this website is using the Apache os.HTML TITLE
Selectome a database of Positive SelectionDESCRIPTION
Selectome is a database of positive selection - based on a rigorous branch-site likelihood test - detected using CODEML on all branches of gene treesPARSED CONTENT
The site selectome.unil.ch has the following in the web page, "Selectome a Database of Positive Selection." I observed that the website also stated " Selectome is a database of positive selection based on a rigorous branch-site specific likelihood test." They also stated " Positive selection is detected using CODEML. On all branches of animal gene trees. The web interface of Selectome enables queries according both to the results of positive selection tests, and to gene related criteria. Test results including positively selected sites can be visualized on the tree, and on the protein sequence alignment." The meta header had selectome as the first keyword. This keyword was followed by positive selection, selection, and codeml which isn't as urgent as selectome. The other words the site used was paml. branch-site is also included but might not be understood by search engines.ANALYZE MORE WEBSITES
Server for the Identification of Site-Specific. Positive Selection and Purifying Selection. Either enter unaligned DNA coding sequences in Fasta. Or enter DNA sequences which are codon aligned, in Fasta. Please enter a reference sequence name, as it appears in your DNA text file.
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